Papers in the HaploTeam
2025
Victor Loegler,
Pia Thiele,
Elie Teyssonnière,
Andreas Tsouris,
Gauthier Brach,
Corinne Cruaud,
Emilie Payen,
Stefan Engelen,
Maitreya J. Dunham,
Jing Hou,
Anne Friedrich,
Joseph Schacherer
From genotype to phenotype with 1,086 near telomere-to-telomere yeast genomes.
Nature.
DOI: 10.1038/s41586-025-09637-0
(2025).
2024
Andreas Tsouris*,
Gauthier Brach*,
Anne Friedrich,
Jing Hou,
Joseph Schacherer
Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast.
Molecular Systems Biology.
DOI: 10.1038/s44320-024-00021-0
(2024).
Andreas Tsouris,
Téo Fournier,
Anne Friedrich,
Jing Hou,
Maitreya J. Dunham,
Joseph Schacherer
Species-wide survey of the expressivity and complexity spectrum of traits in yeast.
PLOS Genetics.
DOI: 10.1371/journal.pgen.1011119
(2024).
2023
Andreas Tsouris,
Gauthier Brach,
Joseph Schacherer,
Jing Hou
Non-additive genetic components contribute significantly to population-wide gene expression variation.
Cell Genomics.
DOI: 10.1016/j.xgen.2023.100459
(2023).
Anne Friedrich,
Jean-Sébastien Gounot,
Andreas Tsouris,
Claudine Bleykasten-Grosshans,
Kelle Freel,
Claudia Caradec,
Joseph Schacherer
Contrasting genomic evolution between domesticated and wild Kluyveromyces lactis yeast populations.
Genome Biology and Evolution.
DOI: 10.1093/gbe/evad004
(2023).
2022
Andreas Tsouris,
Joseph Schacherer,
Olena P. Ishchuk
RNA Interference (RNAi ) as a Tool for High-Resolution Phenotypic Screening of the Pathogenic Yeast Candida glabrata.
Yeast Functional Genomics. Methods in Molecular Biology, vol 2477, Humana Press, 2022..
DOI: 10.1007/978-1-0716-2257-5_18
(2022).
Omar Abou Saada,
Andreas Tsouris,
Chris Large,
Anne Friedrich,
Maitreya J. Dunham,
Joseph Schacherer
Phased polyploid genomes provide deeper insight into the multiple origins of domesticated Saccharomyces cerevisiae beer yeasts.
Current Biology.
DOI: 10.1016/j.cub.2022.01.068
(2022).
2021
Omar Abou Saada,
Andreas Tsouris,
Chris Eberlein,
Anne Friedrich,
Joseph Schacherer
nPhase: an accurate and contiguous phasing method for polyploids.
Genome Biology.
DOI: 10.1186/s13059-021-02342-x
(2021).
2020
Christopher R. L. Large,
Noah Hanson,
Andreas Tsouris,
Omar Abou Saada,
Jirasin Koonthongkaew,
Yoichi Toyokawa,
Tom Schmidlin,
Daniela A. Moreno-Habel,
Hal McConnellogue,
Richard Preiss,
Hiroshi Takagi,
Joseph Schacherer,
Maitreya J. Dunham
Preprint: Genomic stability and adaptation of beer brewing yeasts during serial repitching in the brewery.
DOI: 10.1101/2020.06.26.166157
(2020).